Bioinformatician-Research Engineer

2 semanas atrás


Porto, Portugal Inserm Dr Nouvelle-Aquitaine Tempo inteiro

Organisation/Company: INSERM DR NOUVELLE-AQUITAINE
Department: Délégation régionale
Research Field: Computer science » Other
Researcher Profile: First Stage Researcher (R1)
Positions: Master Positions
Country: France
Application Deadline: 1 Jan 2025 - 12:00 (Europe/Paris)
Type of Contract: Temporary
Job Status: Full-time
Offer Starting Date: 1 Sep 2024
Is the job funded through the EU Research Framework Programme? Horizon 2020
Is the Job related to staff position within a Research Infrastructure? No
Offer Description A research engineer position is available within the 'Physiopathology of energy balance and obesity' team (Neurocentre Magendie) in collaboration with the 'Computational Biology and Bioinformatics' team (IBGC) at Inserm, University of Bordeaux (France). The post involves studying various omics data, mainly on single neuronal cells, as part of a research project funded by the European Community (ERC Consolidator Grant). This project aims to explore neuronal cell plasticity in mouse models of obesity and metabolic diseases, also using the available single-cell neuronal atlases of the human brain. The engineer will work in collaboration with a post-doctoral researcher and another engineer and will benefit from the presence of bioinformaticians who are experts in the design and development of biological data analysis pipelines. He/she will have to take charge of certain pipelines that have already been designed, adapt them to future developments and produce reports on the results, taking into account the requests of project sponsors. He/she should be able to improve existing pipelines by introducing new methods from the literature. In addition, several projects involving the analysis of heterogeneous data are currently underway in the team (single cell or not). As well as analysing single-cell data, the engineer will also develop data integration methods and apply them to the team's available datasets.
Where to apply E-mail: ******
Requirements Research Field: Computer science » Programming
Education Level: Master Degree or equivalent
Skills/Qualifications - Master degree in bioinformatics, biostatistics
- Some experience in bioinformatics applied to genomic or transcriptomic data, ideally at single-cell scale.
- Understanding of the main analyses of single-cell sequencing data.
- Organisational skills, synthetic presentation of scientific results.
- Good communication with biological researchers, interest in biological issues.
- Used to working in a team, ability to listen and make proposals. Autonomy. Interest in the methodological aspects of data analysis.
Specific Requirements - Programming skills in R and/or Python.
- Proficiency in the software required to analyse genomic and transcriptomic data (STAR, DeSeq2, CellRanger).
- Fluency in written and spoken scientific English.
- Practical understanding of multidimensional data analysis methods (PCA, t-SNE, UMAP, statistical learning, etc.).
- Experience with 'single-cell' data desirable but not compulsory (Seurat or Scanpy).
- Skills in the analysis of other types of omics data would be a plus (e.g. proteomics, metabolomics).
- Working knowledge of containerisation tools (Docker, Singularity), version management (Git) and workflow management (Snakemake).
- Knowledge of cellular and molecular biology or neuroscience would be a plus.

#J-18808-Ljbffr



  • Porto, Portugal Inserm Dr Nouvelle-Aquitaine Tempo inteiro

    .Organisation/Company: INSERM DR NOUVELLE-AQUITAINEDepartment: Délégation régionaleResearch Field: Computer science » OtherResearcher Profile: First Stage Researcher (R1)Positions: Master PositionsCountry: FranceApplication Deadline: 1 Jan 2025 - 12:00 (Europe/Paris)Type of Contract: TemporaryJob Status: Full-timeOffer Starting Date: 1 Sep 2024Is the job...


  • Porto, Portugal Inserm Dr Nouvelle-Aquitaine Tempo inteiro

    Organisation/Company: INSERM DR NOUVELLE-AQUITAINEDepartment: Délégation régionaleResearch Field: Computer science » OtherResearcher Profile: First Stage Researcher (R1)Positions: Master PositionsCountry: FranceApplication Deadline: 1 Jan 2025 - 12:00 (Europe/Paris)Type of Contract: TemporaryJob Status: Full-timeOffer Starting Date: 1 Sep 2024Is the job...


  • Porto, Porto, Portugal Ciri - International Center For Infectiology Research Tempo inteiro

    About the RoleCiri - International Center for Infectiology Research seeks a talented Virology Research Engineer to join our team in Lyon, France. This exciting opportunity is part of our efforts to combat emerging pathogens and contribute to groundbreaking research in molecular and cellular virology.Job DescriptionThe successful candidate will work closely...

  • Network Research Engineer

    6 meses atrás


    Porto, Portugal Capgemini Tempo inteiro

    Vortex-CoLab is a growing collaborative laboratory that combines academia and industry allies in an innovation framework to boost tech transfer in the areas of cyberphysical systems and cybersecurity. We are embarking on a journey that merges cutting-edge research and agile market solutions to create top-class products with the highest guarantees of safety...

  • Network Research Engineer

    2 meses atrás


    Porto, Porto, Portugal Capgemini Tempo inteiro

    Vortex-CoLab is a collaborative laboratory that combines academia and industry allies to boost tech transfer in cyberphysical systems and cybersecurity. We are seeking a Network Research Engineer to strengthen our team.RequirementsKnowledge in Network Security and OSI network model, GSM technologies, and paradigms like ICN or SDN;Knowledge about Internet...

  • Electrical Research Engineer

    3 semanas atrás


    Porto, Porto, Portugal Feup Tempo inteiro

    **About Us**The Faculty of Engineering at the University of Porto (FEUP) is a world-renowned institution dedicated to teaching and research in engineering.We are seeking an exceptional Electrical Research Engineer to join our team. As a key member of our research group, you will contribute to advancing the field of electrical engineering, particularly in...


  • Porto, Portugal Umr-1250 P3Cell Tempo inteiro

    Organisation/Company: UMR-1250 P3CellResearch Field: Biological sciences » BiologyResearcher Profile: First Stage Researcher (R1), Recognised Researcher (R2), Established Researcher (R3), Leading Researcher (R4)Positions: Postdoc PositionsCountry: FranceApplication Deadline: 10 Dec 2024 - 23:59 (Europe/Paris)Type of Contract: TemporaryJob Status:...

  • Research Engineer In Mri

    2 semanas atrás


    Porto, Portugal Université De Caen Normandie Tempo inteiro

    .Organisation/Company: Université de Caen NormandieResearch Field: Medical sciences » Health sciencesResearcher Profile: Recognised Researcher (R2)Positions: PhD PositionsCountry: FranceApplication Deadline: 30 Nov 2024 - 23:59 (UTC)Type of Contract: TemporaryJob Status: Full-timeOffer Starting Date: 2 Dec 2024Is the job funded through the EU Research...

  • Research Engineer In Mri

    2 semanas atrás


    Porto, Portugal Université De Caen Normandie Tempo inteiro

    Organisation/Company: Université de Caen NormandieResearch Field: Medical sciences » Health sciencesResearcher Profile: Recognised Researcher (R2)Positions: PhD PositionsCountry: FranceApplication Deadline: 30 Nov 2024 - 23:59 (UTC)Type of Contract: TemporaryJob Status: Full-timeOffer Starting Date: 2 Dec 2024Is the job funded through the EU Research...

  • Research Engineer In Mri

    2 semanas atrás


    Porto, Portugal Université De Caen Normandie Tempo inteiro

    Organisation/Company: Université de Caen NormandieResearch Field: Medical sciences » Health sciencesResearcher Profile: Recognised Researcher (R2)Positions: PhD PositionsCountry: FranceApplication Deadline: 30 Nov 2024 - 23:59 (UTC)Type of Contract: TemporaryJob Status: Full-timeOffer Starting Date: 2 Dec 2024Is the job funded through the EU Research...


  • Porto, Porto, Portugal Inria, The French National Research Institute For The Digital Sciences Tempo inteiro

    About the JobInria, the French national research institute for the digital sciences is seeking a highly skilled Research Engineer to join their team in Strasbourg.


  • Porto, Porto, Portugal Cnrs Tempo inteiro

    Company OverviewCRAL, a joint research unit of CNRS and Université Claude Bernard Lyon 1 (UCBL), is a global leader in designing and producing cutting-edge optical instruments for astronomy.Job DescriptionWe are seeking an Expert Research Engineer specializing in Instrument Development and Experimentation in Optical Metrology to join our team. The...


  • Porto, Porto, Portugal Centro De Computação Grafica Tempo inteiro

    **Company Overview**Centro De Computação Grafica is a leading research institution in the field of computer graphics and artificial intelligence.Salary: €990.98 per month, with opportunities for career growth and professional development.Job Description:We are seeking a highly skilled Research Engineer to join our team in developing cutting-edge AI...


  • Porto, Porto, Portugal University Of Bordeaux Tempo inteiro

    Are you passionate about developing innovative technologies for the environment and society? Do you want to contribute to the design of next-generation nonlinear RadioFrequency sensors? We are seeking a talented Research Engineer to join our team at the University of Bordeaux.About the RoleWe offer a unique opportunity to work on a cutting-edge project,...


  • Porto, Porto, Portugal Associação Fraunhofer Portugal Research Tempo inteiro

    OverviewFraunhofer Portugal AICOS is a research organization that focuses on developing cutting-edge technologies. We are seeking an experienced AI engineer to join our team and contribute to the development of machine learning pipelines.


  • Porto, Portugal Https:Www.Energyjobline.ComSitemap.Xml Tempo inteiro

    Job DescriptionThe R&D Engineer is responsible for product development and improvement as well as technical sales support for a number of steel wire rope product groups. The R&D Engineer will support Marketing & Sales in rope design upon customer request, as well as independently execute research & development work to rejuvenate product ranges. Portfolio...


  • Porto, Porto, Portugal Grenoble Inp - Institute Of Engineering Tempo inteiro

    Company Overview: Grenoble INP - Institute of Engineering is a renowned institution in France, dedicated to excellence in engineering research and education.Estimated Salary: €35,000 - €45,000 per annum, depending on experience.Job DescriptionWe are seeking an Electronics Research Engineer to join our RMS team at the TIMA laboratory. The successful...


  • Porto, Porto, Portugal Aix-Marseille University Cnrs Amidex Tempo inteiro

    The Research Engineer will be part of the team at Aix-Marseille University / CNRS / AMIDEX, working on advanced plasma simulation. This role is an excellent opportunity to contribute to cutting-edge research in fusion energy and gain valuable experience in high-performance computing.Job OverviewThis full-time position is based at the Institut de Recherche...


  • Porto, Portugal Research Center For Respiratory Diseases, Inserm U1100 Tempo inteiro

    Research Center for Respiratory Diseases, Inserm U1100Organisation/Company: Research Center for Respiratory Diseases, Inserm U1100Research Field: Biological sciences » Biology, Medical sciencesResearcher Profile: Recognised Researcher (R2), Leading Researcher (R4), First Stage Researcher (R1), Established Researcher (R3)Country: FranceApplication Deadline:...


  • Porto, Porto, Portugal Université De Caen Normandie Tempo inteiro

    Company OverviewUniversité de Caen Normandie, a leading institution in Normandy, is committed to advancing higher education and research. With 35,000 students, it plays a vital role in shaping the region's academic landscape.Job DescriptionAs a Research Engineer In MRI, you will contribute to the CrIM project, developing new diagnostic tools for Magnetic...