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Phd or Msc in Bioinformatics Dep.
4 meses atrás
Main responsibilities
- Analyse Next-Generation Sequencing data, following best practices;
- Use computational tools to gather and analyse genomic/transcriptomic data in the fields of plant and microorganism population biology and genetics;
- Work closely with wetlab scientists to develop/implement tools and pipelines that accelerate the development of new products for biological protection of crops;
- Systematically improve, maintain and document in house developed software (following best practices on reproducibility);
- Collaborate with the department director in defining the strategic plans for the development of Bioinformatics/Computational Biology at InPP;
- Register, interpret and report results accordingly to InPP ́s established procedures, both internally and with external stakeholders.
Specific requirements
- PhD or MSc in bioinformatics, computational biology or similar;
- Strong background in bioinformatics/computational biology;
- Experience in analysing next generation sequencing data (e.g. microbial and plant genome assembly & annotation; metabarcoding; metagenomics; metabolomics; transcriptomics);
- Proficiency with one or more scripting languages (e.g. R, Python) and with bash/unix scripting;
- Willing to both learn new techniques and teach/supervise BSc level researchers/students;
- Creative and independent, but also able to work as a member of multidisciplinary, projectoriented team, with demonstrated problemsolving skills and flexibility;
- Good written and spoken English (Portuguese is beneficial).
Ideal requirements
- Expertise in plantmicrobe interactions
- Experience in analysing genomics/transcriptomics data generated by diverse technologies (Illumina, Oxford Nanopore, PacBio);
- Experience in managing servers and virtual machines, including configuring and maintaining system environments and software installations
- Experience with working in Unix/Linux environments, literate programming (Rmarkdown, Jupyter notebooks) and version control systems (e.g. Git)
InnovPlantProtect is a private non-profit association
InnovPlantProtect aims to create innovation for the protection of crops, seeds and post-harvest products through:
- Development of innovative technologies and knowledge creation, as well as improvement of existing technologies for crop protection;
- Applied scientific research to create novel intellectual property developed technologies in the market, and to develop processes and products;
- Provide technical support to public or private companies and entities, assisting them in the introduction of biotechnological strategies, methods and processes, and in the orientation and implementation of industrial research and development, directed towards the protection of crops, seeds and postharvest products;
- Collaboration with (inter)national public and/or private institutions, in their areas of activity.
Workplace
The workplace will be at the headquarters of InnovPlantProtect in Elvas, located at INIAV, in the former National Plant Breeding Station.
Salary and contract
Financial Support
How to Apply
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Curriculum vitae (CV):
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Motivation letter:
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Two reference contacts:
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Statement of honour that CV content is accurate.
Deadlines
This call is open from February 6th to 24th, 2023 , with a decision expected by March 3rd.
**Generalrules of data protection (GDPR)
