Bioinformatics Research Associate

Há 4 dias


Lisboa, Lisboa, Portugal Gimm Tempo inteiro

Overview: Gulbenkian Institute for Molecular Medicine (GIMM) is a leading research institution focused on advancing our understanding of molecular medicine. We are currently seeking a highly skilled Bioinformatics Research Associate to join our team.

Job Description:

We are looking for an exceptional researcher with a strong background in bioinformatics to contribute to our project "CENTAUR – Creating and refining whole-genome and core-genome typing schemas for pathogen surveillance". The successful candidate will be responsible for developing and applying high-throughput sequencing data analysis pipelines for bacterial identification, virulence factors, and antimicrobial resistance, as well as analysis methods and visualization of phylogenetic relationships incorporating other metadata.

The selected candidate will also participate in the development of new analysis methods, specifically improving whole-genome multilocus sequence typing schemes. Additionally, they will analyze high-throughput sequencing results for phylogenetic and population structure analyses of human pathogenic bacteria, and develop tools that generate analysis reports usable by epidemiologists and other healthcare professionals without advanced bioinformatics knowledge.

Required Skills and Qualifications:
  • Hold a PhD in Bioinformatics, Microbiology, Biology, Health Sciences, Computer Science, Biochemistry, Biomedical Sciences, or related fields, with an emphasis on genomic data analysis, phylogenetic analysis, or population biology;
  • PhD must have been obtained less than 3 years ago;
  • Proficiency in working with the Linux operating system;
  • Strong scripting skills in bash;
  • Proficiency in English;
  • International experience of the candidate;
  • Experience with Python programming;
  • Experience working with high-throughput sequencing data;
  • Experience working on bacterial population genomic analysis.
Benefits:

The fellow will benefit from a monthly stipend of €1801, paid by wire transfer at the end of each month. The selected candidate will also have the opportunity to work in a multidisciplinary team within the Project and contribute to the development of new analysis methods and tools.

Work Place and Scientific Orientation:

The research activities will be developed at Molecular Microbiology & Infection Lab of GIMM, under the supervision of Mário Ramirez.



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